Parse Error At Line 1 Sequence And Quality Are Inconsistent

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#78 Samtools error 'sequence and quality are inconsistent. tool and try to parse the bowtie sam output to. q -1 1.fq -2 2.fq–maxins 3500.

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Feb 18, 2016. 3.2 view the same top 5 lines of a bam file with picard ViewSam. 4 perform. 5.3. 1 check the effect of removing singleton reads; 5.3.2 get samtools statistics on correctly paired reads. 5.4 add. VALIDATION_STRINGENCY=SILENT was also added to avoid getting error messages about inconsistent format.

Question: Samtools Api: Sequence And Quality Are Inconsistent. 1. 4.5 years ago by. mapped sequence without CIGAR Parse error at line 2: sequence and quality are.

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after mapping,i encountered an error during converting my sam out. sequence and quality are inconsistent. Need to parse pooled bam file based on sequence.

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I keep receiving a "sequence and quality are inconsistent" parse error when I. sequence and quality are inconsistent" parse error. full sequence/quality in.

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